Search for dissertations about: "l."

Showing result 1 - 5 of 2954 swedish dissertations containing the word l..

  1. 1. Functional association networks for disease gene prediction

    Author : Dimitri Guala; Erik L L Sonnhammer; Hjalmar Brismar; Yves Moreau; Stockholms universitet; []
    Keywords : NATURVETENSKAP; NATURAL SCIENCES; network biology; biological networks; network prediction; functional association; functional coupling; network integration; functional association networks; genome-wide association networks; gene networks; protein networks; fret; functional enrichment analysis; network cross-talk; pathway annotation; gene prioritisation; network-based gene prioritization; benchmarking; Biochemistry towards Bioinformatics; biokemi med inriktning mot bioinformatik;

    Abstract : Mapping of the human genome has been instrumental in understanding diseasescaused by changes in single genes. However, disease mechanisms involvingmultiple genes have proven to be much more elusive. Their complexityemerges from interactions of intracellular molecules and makes them immuneto the traditional reductionist approach. READ MORE

  2. 2. In silico modelling for refining gene regulatory network inference

    Author : Thomas Hillerton; Erik L. L. Sonnhammer; Richard Bonneau; Stockholms universitet; []
    Keywords : NATURVETENSKAP; NATURAL SCIENCES; Gene regulatory networks; simulation; benchmarking; method development; biokemi med inriktning mot bioinformatik; Biochemistry towards Bioinformatics;

    Abstract : Gene regulation is at the centre of all cellular functions, regulating the cell's healthy and pathological responses. The interconnected system of regulatory interactions is known as the gene regulatory network (GRN), where genes influence each other to maintain strict and robust control. READ MORE

  3. 3. Inference of functional association networks and gene orthology

    Author : Thomas Schmitt; Erik L. L. Sonnhammer; Søren Brunak; Stockholms universitet; []
    Keywords : NATURVETENSKAP; NATURAL SCIENCES; orthology; InParanoid; FunCoup; systems biology; biological networks; network inference; functional coupling; functional association; biokemi; inriktning teoretisk kemi; Biochemistry with Emphasis on Theoretical Chemistry;

    Abstract : Most proteomics and genomics experiments are performed on a small set of well-studied model organisms and their results are generalized to other species. This is possible because all species are evolutionarily related. When transferring information across species, orthologs are the most likely candidates for functional equivalence. READ MORE

  4. 4. Improving the accuracy of gene regulatory network inference from noisy data

    Author : Deniz Seçilmiş; Erik L.L. Sonnhammer; Pierre Geurts; Stockholms universitet; []
    Keywords : NATURVETENSKAP; NATURAL SCIENCES; Biochemistry towards Bioinformatics; biokemi med inriktning mot bioinformatik;

    Abstract : Gene regulatory networks (GRNs) control physiological and pathological processes in a living organism, and their accurate inference from measured gene expression can identify therapeutic mechanisms for complex diseases such as cancers. The biggest obstacle in achieving the accurate reconstruction of GRNs is called ‘noise’, which considerably alters the measured gene expression because the noise generally dominates the biological signal. READ MORE

  5. 5. Evolution of streamlined genomes in ultra-small aquatic bacteria

    Author : Weizhou Zhao; Siv Andersson; Sandra L. Baldauf; Sarahi L Garcia; Karen Lloyd; Uppsala universitet; []
    Keywords : NATURVETENSKAP; NATURAL SCIENCES; streamlined genome; aquatic bacteria; single cell genomics; metagenomics; evolutionary genomics; salinity; Baltic Sea; Biologi med inriktning mot molekylär evolution; Biology with specialization in Molecular Evolution;

    Abstract : This thesis investigates the evolutionary processes of streamlined genomes from aquatic bacteria adapting to different salinities, using two groups of ultra-small aquatic bacteria (LD12 Alphaproteobacteria and acI Actinobacteria). Due to difficulties in obtaining pure cultures of these bacteria, culture-free approaches (single-cell genomics and metagenomics) were used to construct and compare genomes, and to study the mechanisms and selective forces of adaptation to freshwater, brackish, and marine ecosystems. READ MORE