Search for dissertations about: "DNA data set"

Showing result 1 - 5 of 123 swedish dissertations containing the words DNA data set.

  2. 1. Exploring the multiscale 3D architecture of human chromosome contact networks

    Author : Dolores Bernenko; Ludvig Lizana; Martin Rosvall; Petter Holme; Umeå universitet; []
    Keywords : NATURVETENSKAP; NATURAL SCIENCES; NATURVETENSKAP; NATURAL SCIENCES; community detection; DNA 3D organization; Hi-C; network science; DNA-DNA contact data;

    Abstract : Cells regulate genes to coordinate essential functions allowing cells to grow, divide, specialize, and respond to stresses. While regulatory proteins are the most common way to control these genes, the DNA’s 3D structure also plays a critical role as it affects how proteins access genes and how regulatory DNA elements interact over large genomic distances. READ MORE

  4. 2. Statistical analysis of metagenomic data

    Author : Viktor Jonsson; Göteborgs universitet; []
    Keywords : NATURVETENSKAP; NATURAL SCIENCES; NATURVETENSKAP; NATURAL SCIENCES; Metagenomics; Statistical methods; Hierarchical Bayesian models; Statistical power; False discovery rate; Environmental genomics; Generalized linear models; Count data; Environmental genomics;

    Abstract : Metagenomics is the study of microbial communities on the genome level by direct sequencing of environmental and clinical samples. Recently developed DNA sequencing technologies have made metagenomics widely applicable and the field is growing rapidly. READ MORE

  5. 3. Barcoded DNA Sequencing for Parallel Protein Detection

    Author : Mahya Dezfouli; Afshin Ahmadian; Ulf Landegren; KTH; []
    Keywords : MEDICIN OCH HÄLSOVETENSKAP; MEDICAL AND HEALTH SCIENCES; DNA barcoding; antibody labeling; antibody oligonucleotide bio-conjugation; DNAassisted proteomics; immuno-sequencing I-Seq ; droplet-based system; large-scale data analysis; Biotechnology; Bioteknologi;

    Abstract : The work presented in this thesis describes methodologies developed for integration and accurate interpretation of barcoded DNA, to empower large-scale-omics analysis. The objectives mainly aim at enabling multiplexed proteomic measurements in high-throughput format through DNA barcoding and massive parallel sequencing. READ MORE

  6. 4. High-level modelling and local search

    Author : Magnus Ågren; Pierre Flener; Uppsala universitet; []
    Keywords : NATURVETENSKAP; NATURAL SCIENCES; NATURVETENSKAP; NATURAL SCIENCES; Datavetenskap; Computer Science;

    Abstract : Combinatorial optimisation problems are ubiquitous in our society and appear in such varied guises as DNA sequencing, scheduling, configuration, airline-crew and nurse rostering, combinatorial auctions, vehicle routing, and financial portfolio design. Their efficient solution is crucial to many people and has been the target for much research during the last decades. READ MORE

  7. 5. Electric DNA chips for determination of pathogenic microorganisms

    Author : Yanling Liu; Sven-Olof Enfors; Thomas Schweder; KTH; []
    Keywords : NATURVETENSKAP; NATURAL SCIENCES; TEKNIK OCH TEKNOLOGIER; ENGINEERING AND TECHNOLOGY; electric DNA chip array; fast determination; virulence genes; multiplexed gene detection; bacterial colony; ultrasonication; DNA fragmentation; Bacillus cereus; Biology; Biologi; Bioengineering; Bioteknik;

    Abstract : Silicon-based electric DNA chip arrays were utilized to fast identify pathogenic microorganisms with respect to the capacity to produce toxins involved in foodborne poisoning and infections. Bacteria of the B. cereus and the enterohemorrhagic E. READ MORE