Search for dissertations about: "Sileneae"

Showing result 1 - 5 of 6 swedish dissertations containing the word Sileneae.

2. 1. Systematics in Sileneae (Caryophyllaceae) – Taxonomy and Phylogenetic patterns

   Author : Frida Eggens; Bengt Oxelman; Magnus Lidén; Susan R. Kephart; Uppsala universitet; []
   Keywords : NATURVETENSKAP; NATURAL SCIENCES; Sileneae; Silene; RNAP; psbE-petG; ITS; rps16; relative dating; Rigidulae; Heliosperma; Arenosae; phylogeny; homoploid reticulate evolution; Silene linearis Decne.; Silene polyphylla L.; Hawaiian Silene; Systematics and phylogenetics; Systematik och fylogeni;

   Abstract : The focus for the first part of the thesis is on the systematics of species belonging to Silene subgenus Silene. Phylogenetic relationships are inferred from DNA sequences from both the plastid (the rps16 intron) and the nuclear (ITS, intron of the RPB2 gene) genomes. READ MORE

4. 2. Phylogenetic Support and Chloroplast Genome Evolution in Sileneae (Caryophyllaceae)

   Author : Per Erixon; Bengt Oxelman; Sean Graham; Uppsala universitet; []
   Keywords : Biology; Phylogenetics; Bayesian inference; Bootstrapping; cpDNA; Sileneae; Interspecific chloroplast recombination; Hybridization; clpP; Positive selection; Extreme substitution rates; Biologi;

   Abstract : Evolutionary biology is dependent on accurate phylogenies. In this thesis two branch support methods, Bayesian posterior probablities and bootstrap frequencies, were evaluated with simulated data and empirical data from the chloroplast genome. READ MORE

5. 3. Taxonomy and Reticulate Phylogeny of Heliosperma and Related Genera (Sileneae, Caryophyllaceae)

   Author : Božo Frajman; Bengt Oxelman; Mats Thulin; Christian Brochmann; Uppsala universitet; []
   Keywords : NATURVETENSKAP; NATURAL SCIENCES; Sileneae; Silene; Heliosperma; Atocion; Viscaria; taxonomy; phylogenetics; relative dating; reticulate evolution; chloroplast capture; homoploid hybridisation; BEAST; r8s; PATHd8; Prometheus; RPA2; RPB2; RPD2a; RPD2b; Balkan Peninsula; endemics; Systematics and phylogenetics; Systematik och fylogeni;

   Abstract : Heliosperma (nom. cons prop.) comprises 15—20 taxa, most of them endemic to the Balkan Peninsula. DNA sequences from the chloroplast (rps16 intron, psbE-petG spacer) and the nuclear genome (ITS and four putatively unlinked RNA polymerase genes) are used to elucidate phylogenetic relationships within Heliosperma, and its position within Sileneae. READ MORE

6. 4. Disentangling the Reticulate History of Polyploids in Silene (Caryophyllaceae)

   Author : Magnus Popp; Bengt Oxelman; Magnus Lidén; Jeff J. Doyle; Uppsala universitet; []
   Keywords : NATURVETENSKAP; NATURAL SCIENCES; Biology; Silene; Sileneae; polyploidy; low copy nuclear DNA; RNA polymerase; RPA2; RPB2; RPD2; internal transcribed spacer; rps16; psbE-petL; concerted evolution; reticulate evolution; lineage sorting; Biologi; Biology; Biologi;

   Abstract : DNA sequences from the rps16 intron and the psbE-petL spacer from the chloroplast genome, the ribosomal nuclear ITS region, and introns from the low copy nuclear genes RPA2, RPB2, RPD2a and RPD2b, are in different combinations used to infer phylogenetic relationships in Sileneae (Caryophyllaceae). Used in concert, the biparentally inherited nuclear regions are useful to distinguish between paralogy due to allopolyploidy and single gene duplications, respectively, because the latter are not expected to give rise to repeated phylogenetic patterns in potentially unlinked sequence regions. READ MORE

7. 5. Phylogenetic Relationships of Silene sect. Melandrium and Allied Taxa (Caryophyllaceae), as Deduced from Multiple Gene Trees

   Author : Anja Rautenberg; Bengt Oxelman; Mikael Thollesson; Magnus Lidén; Freek Bakker; Uppsala universitet; []
   Keywords : NATURVETENSKAP; NATURAL SCIENCES; Silene; Elisanthe; Melandrium; Conoimorpha; Caryophyllaceae; Silene multinervia; relative dating; extreme substitution rates; phylogeny; BEST; BEAST; cpDNA; mtDNA; RNA polymerase; RPA2; RPB2; RPD2; SlX1; SlY1; ITS; introgression; incongruent phylogenies; chromosome count; coalescent; Bayes Factors; Systematics and phylogenetics; Systematik och fylogeni; systematisk botanik; Systematic Botany;

   Abstract : This thesis focuses on phylogenetic relationships among some of the major lineages in Silene subgenus Behenantha (Caryophyllaceae) using DNA sequences from multiple, potentially unlinked gene regions from a large taxonomic and geographic sample. Both traditional phylogenetic analyses and a strategy to infer species trees and gene trees in a joint approach are used. READ MORE