Search for dissertations about: "single cell RNA-seq"
Showing result 1 - 5 of 42 swedish dissertations containing the words single cell RNA-seq.
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1. Utilization of single-cell RNA-Seq and genome-scale modeling for investigating cancer metabolism
Abstract : Cancer remains a leading cause of death worldwide, and its dysregulated metabolism is a promising target for therapy. However, metabolism is complex to study – the metabolism of a cell involves the interplay of thousands of chemical reactions that are combined in different ways across tissues and cell types. READ MORE
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2. Uncovering the genetics underlying host-parasite interactions during Plasmodium falciparum malaria transmission
Abstract : In eukaryotes, cellular differentiation is often orchestrated by programmed arrays of activation and repression of genes underlying the specific phenotypes of cell-types. To complete its life cycle, the single-celled Apicomplexan parasite Plasmodium falciparum, the most deadly of the human malaria parasites, must repeatedly differentiate and convert into unique cell types that can exploit niches within their human and mosquito hosts. READ MORE
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3. Computational methods for analysis and visualization of spatially resolved transcriptomes
Abstract : Characterizing the expression level of genes (transcriptome) in cells and tis- sues is essential for understanding the biological processes of multicellular or- ganisms. RNA sequencing (RNA-seq) has gained traction in the last decade as a powerful tool that provides an accurate quantitative representation of the transcriptome in tissues. READ MORE
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4. Computational Single-Cell Genomics Methods for Cell State Estimation and their Application to Hematopoietic Systems
Abstract : The focus of this doctoral dissertation was to develop novel and scalable computational genomics methods for analysing single-cell genomic modalities. Scarf, a highly memory-efficient single-cell data analysis toolkit, was developed to enable an analysis of very large-scale datasets on personal computers, and the execution of parallel workflows on server-scale computational systems. READ MORE
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5. Functional Studies of Genes Associated with Muscle Growth in Pigs and Hair Greying in Horses
Abstract : Domestic animals have become very different from their wild ancestors during domestication and animal breeding. This provides a good model to unravel the molecular mechanisms underlying phenotypic variation. In my thesis I have studied genes affecting two important traits, leanness in pigs and hair greying-associated melanoma in horses. READ MORE